I've had this problem with SMAPI. For some reason every time I launch Stardew Valley with the SMAPI launcher, my options get reset. What I mean by that is every time I launch the game I have to go into the options and change things like "always show tool-hit location" and remap my keys because everything is on the default setting again. I have infact tested if it was any mod. I have run the game without mods but with the SMAPI launcher and the settings keep getting reset. I have launched it with each individual mod I have but nothing seems to work. It's really more of an inconvenience at best, but I don't want to have to go into the options EVERY time I launch the game and have to reset everything to my preferred settings. It gets tedious and I shouldn't have to do that every time I want to play.