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It seems that barn and coop doors being left open overnight when the server closes (finishing a game session) causes weird bugs with the animals....
This happened on my file too. We lost a chest full of resources when we were moving stuff around from this glitch.
A current bug we're having: On our current mp, farm, the animals won't go into the barn or eat. They are getting grumpy now and not producing...
You can put them in the trash, or give them to whoever hasnt given them to Lewis yet out of your players (in my experience, picking up duplicates...
I'm not sure if this is a bug or extremely unlucky, but on my mp farm we've had a rabbit at 5 hearts for 3 whole seasons, and we only got 2...