upon talking with sail the first time, it will tell you to replace the shiplocker (it wasnt functional before that, so no inventory possible yet in it).
It will give you a new shiplocker for all the default races, and remove the broken one.
After this it is a player made object and will retain its contents on upgrading. On the last upgrade to BYOS, it will spill everything on the floor, but it will not be lost.
Works best with characters created with this mod. If you run into problems with...
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Build Your Own Ship